what do you mean? the atmosphere is chaotic on earth as it is on other planets. on other planets the atmosphere travels with the surface as well.
overall if you took the average velocity of all the gas molecules then you would see them rotating with the planet(be it jupiter, earth, venus, even stars). if you look at certain bits of the atmosphere then you will see anomalies. on earth we call this weather. we also call it weather anywhere else its observed.
weather is caused by the uneven heating of the earths surface and the coriolis force. this produces everything from hurricanes to a light drizzle.