Dear CharonY
Thank you very much for your comments.
We use HighRox SYBR green mix on ABI stepone plus
I have included Cts here. Please take a look:
Cell on scaffold (test): Ct1 for gene of interest: 34, Ct2 for gene of interest: 33. Ct1 for GAPDH: 31, Ct2 for GAPDH: 31
Control cells (without scaffold): Ct1 for gene of interest: 32, Ct2 for gene of interest: 32. Ct1 for GAPDH: 21, Ct2 for GAPDH: 22
I do not have access to the melt curves right now
In your opinion what causes the huge difference in Cts of GAPDH between samples?
Thanks a lot