I don't see much benefit in learning anything scientific from Anime other than it might give you some ideas or a starting point for interesting concepts thus creating an interest in the sciences; Of note is "Planetes" which is a story about "space debris collection" circa 2079 which is often credited for it's realistic portrayal of space exploration.
http://www.themanime.org/viewreview.php?id=713
http://www.amazon.co.uk/Planetes-Complete-Collection-Region-NTSC/dp/B000HT3876/ref=sr_1_2?s=dvd&ie=UTF8&qid=1286897823&sr=1-2
I Suppose further to this would possibly Masamune Shirows Ghost in the shell series, which details with the continuing "Cyberisation" of the human race, it shows in depth dipictions of cybernetic implants and full cyborg humans while at the same time discussing the ethics of such a thing. A lot of anime concepts are relevent in science, just perhaps not readily applicable.