Thank you, I understand better now. It's a shame those alpha and epsilon bond/atoms are nowhere explained... Not in my book, nor on the internet. While I understand epsilon (=sidechain?) and alpha, I just hope I won't come across more Greek letters ^^
I know that the alpha carbon is the one linked to the radical specific for each amino acid. But what does alpha-peptide bond mean? In my book (harper's illustrated biochemistry) it says that ubiquitin is attached to lysyl residues in a given protein by NON-alpha peptide bonds. So if I don't know what alpha-peptide bond means I cannot understand ubiquitination.
Here are some thoughts (guesses): does non-alpha peptide bond mean that the bond is made between ubiquitin and an atom in the radical chain (as opposed to the chain common to all amino acids)?
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