There is a new book on evolution theory: The Evolution of Aging (2nd ed), ISBN 0978870905, by Theodore Goldsmith that discusses digital information aspects of inheritance and their implications for evolution theory.
Darwin tells us that selective breeding and the corresponding evolutionary mechanism of natural selection both depend on the natural variation of characteristics between different individuals. Variation creates differences for selection to select.
According to the book, natural variation in more complex species is not actually "natural" in the sense of being a fundamental characteristic of all living things. Instead, because of the digital nature of the genetic code, the "natural" intrinsic situation is that members of a species should nominally tend toward being genetically identical. "Natural" variation in complex organisms is actually created and maintained primarily by the action of a long list of complex evolved mechanisms that process mutations including sexual reproduction, genetic recombination, certain behaviors, etc. The degree of variation produced by these mechanisms is described to be much greater than that produced by the occasional propagatable mutation.
This brings up the issue of how all these variation-producing traits evolved. It seems to be a somewhat circular situation: organisms are evolving the means for evolving.
Further, variation considered as an evolved design feature is itself incompatible with Darwinian evolution as generally understood. If organisms are striving to propagate their personal designs, then variation is adverse because it acts to reduce the ability of an organism to do that. A Darwinian organism would rather clone itself and therefore propagate ALL of its design characteristics than dilute its design via sexual reproduction and other evolved variation-producing characteristics. Cloning is the "natural", easier, route given digital genetics.
So how did these characteristics evolve? Wouldn't an organism that had the variation-producing characteristics be at a disadvantage relative to one that did not (such as one that reproduced by cloning) and therefore "select out?" An organism that happened to possess an advantageous design would certainly seem to be less able to propagate that design. Its descendents would likely be less able to survive, breed, etc. than would a clone. Somehow variation-producing characteristics were able to evolve despite fitness disadvantage, apparently because they convey an evolutionary advantage, an improvement in the capacity for evolution.
The question: Is this a plausible idea? If not, where is the fatal logical flaw?
If you accept these arguments, Goldsmith then goes on to suggest that aging, seen as a design feature that deliberately limits life span, also enhances the evolution process in several different ways. If variation can evolve, then aging can evolve even though both are fitness-adverse. This is counter to traditional theories of aging that say that aging is an adverse "side effect" linked to some beneficial and therefore evolvable trait such that there is a net Darwinian benefit. ("Beneficial" means a trait that helps in survival or reproduction as in "survival of the fittest.")
I realize these concepts might seem, at the least, radical, but they are nonetheless interesting.