I subscribe to Nuts and Volts magazine. It has for several years now been running a column about near space exploration using weather balloons. It is authored by Paul L. Verhage, and he along with several universities have done a lot of work in this area. You will not have to reinvent the wheel if you subscribe to this magazine and go look at all the past issues online. Alternatively, there used to be, don't know if it's still there, an extensive treatment of this by the same author on the Parallax website, but I don't remember exactly on the website it was. The information is in quite a few chapters. It describes airframes, the balloons, the flight computers, cameras, batteries, solar cells, etc. etc. There are FAA rules that must be adhered to if you're going to stay within the law in this activity also. You would do well to access all of this information from both sources. I don't know if the info on the Parallax site has ever been updated, but I know that he describes a new design for his airframes in the latest Nuts and Volts edition, and he has come out with different flight computer designs in the past. Do a little digging around, you'll find a wealth of information. Good luck!
Charlie