CharonY
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Advice for Masters degree in europe
CharonY replied to accidental.tourist's topic in Science Education
Well, depending on the country tuition fees can be pretty low. Germany has excellent unis and extremely low tuition fees (compared to the US or UK that is). In the long run it really depends on what kind of job you are looking for. I know, at this early stage it is really hard to envision what one would love to do for the rest of ones working life, also the mental image that one may have for certain jobs may be fairly inaccurate, if one does not talk to people who work there directly. An important point, however, is that a certain degree will not give you a job in a given field. If you want to go int biomed, you should first figure out what you would like to do. E.g. work in a pharma company, work in academia, etc. For instance, if you want to be an analyst in a given company, maybe check job listings and see what their requirements are. Most of the time degrees in biochem, molecular biology and similar are interchangeable, for instance. But as Timo pointed out, the first bit is figuring out what one wants to do. -
This is odd. Normally I would have assumed that there is something wrong with the pocket or during the loading step, but you say that it is not the case and it happens with each gel? Does it only happen in the outermost lanes, i.e. have you tried running fewer lanes and see if it persists? Also, what loading buffer do you use?
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As well as damaging several other organs, including kidney and heart.
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Catalase and superoxide dismutase regulation
CharonY replied to cfmendez's topic in Biochemistry and Molecular Biology
Regarding the turnover: yes the regulation of oxidative stress response is usually fast. However, while it explains the increase of SOD activity, it would not explain catalase decrease. Usually enzymes like this are allowed to linger around before being degraded. If you really want to figure out whether there is some kind of modulation of activity as opposed to enzyme abundance change, I would advise you to quantify the SOD and catalase content directly. The easiest ways is mass spectrometrically, if you got access, or via Western. qPCR would be even faster but it is not trivial to translate mRNA changes into actual protein abundance changes. Also, as a matter of habit re-validate the assays, and see how significant the differences really are. -
Catalase and superoxide dismutase regulation
CharonY replied to cfmendez's topic in Biochemistry and Molecular Biology
You may want to check whether there papers out there that have time-course experiments on oxidative stress. I cannot point you to a particular paper off the top of my head, but I know that I read some years ago. From a biological point of view expression changes of proteins within minutes is quite reasonable time for protein turnover. It depends on the specific stimulus and the respective underlying regulatory mechanism, of course. However, from my own experiments (again, years ago) I saw mRNA level changes in bacteria during oxidative stresses well below one minute (basically below time resolution). The effect thereof on protein levels is cumulative. The question that I have is in which time frame you expect DA exposure to result in oxidative stress (and by which mechanism). Direct exposure to oxidative stress (e.g. using paraquat or H2O2) only takes minutes to result in observable expression changes and does not require activity attenuation for that time frame. -
What do you mean with free-trade in this context? Also, why would nation-based specialization be a consequence of it?
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Darn, fell for it.
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Isn't that vertical thinking?
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Help with science fair method.. pretty please :)
CharonY replied to sonna10's topic in Homework Help
Ideally you should work with cultured bacteria rather than swabs. It is kind of tricky go get good lawn based on a swab, especially as you are going to have a very heterogeneous growth including fungi. Also, streaking often does not result in a nice lawn, diluting the bacteria into soft agar and pour it tends to work better, or dilute them into media and use a spreader (not deionized water, as some bacteria are not osmotically stable enough to survive that). The well method is more accurate than using droplets. Alternatively, use a sterile piece of filter paper (with defined size) and soak it in the compound to be tested. -
Do We Need So Many Other Animals on Earth?
CharonY replied to Dekan's topic in Ecology and the Environment
There are a lot of varying reasons. Many of which are not centered on humans of the only worthwhile animal on earth. But even assuming that everything should only be geared towards human survival (something that I do not subscribe to) then the question is what do we need to conserve the ecosystem or at least maintain it at a level that may sustain human life. Just keeping foodstock around is clearly insufficient. -
How to determine if growth factor is activated
CharonY replied to MTL's topic in Biochemistry and Molecular Biology
a) With PCR you can only detect DNA and (after RT) RNA. b) Activity is dependent on concentration and activation status. -
They won't slow down overall activity. They may interfere with digestion and, the ability to kill bacteria. But it won't result in a loss in the ability to take up nutrients, which happens later, anyway (if that is what you are thinking). Also the connection of nutrient uptake and metabolic levels is quite complex and also involves other external and internal factors.
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Vaccine development is a long processes going through many phases. If you actually work on the bench you will rarely be involved in all of them. Especially the discovery/design phase will not involve animal tests. However, to me it looks more that you are interested in immunology or biomedical research rather than microbiology. The microbiology side will normally involve the analysis of e.g. pathogenicity mechanisms (as well as overall bacterial physiology). This may involve animal testing, but often cell models are used instead. Biology deals with how the organisms do certain things (i.e. more base research). Medical application usually comes from biomedical research. This knowledge may lead to the development of new treatments, but it does not has to. In short, you may be conflating various elements into a single career path, what you describe is, in effect covered by several different disciplines and career paths. You may want to look deeper into what each discipline is really dealing with, before making any decisions.
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I am not sure what you mean. Burzynski has started selling his cure before he finalized all the required trials. There is no suppression outside normal regulation. Incidentally the data should be published soonish, and since most appear to be phase II (where efficacy is evaluated) one can see whether it works or not. What is slightly worrisome is that although some of the studies appear to have concluded quite a while ago, he so far only presented it on meetings but not yet in a publication. If that happens we will know more. I do not know the story about hydrazine sulfate, however a quick search in the Lancet did not reveal any studies showing effectiveness. Did they provide references?
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This is somewhat misleading. The case was about whether terminally ill patients have the fundamental right to these treatments. In the end it was a constitutional question that had to be answered. Also it should be noted that no one is banned from trying alternative medicine. Unless it is harmful it does not fall under FDA regulation if it does not explicitly state that it heals cancer, for instance (that is, without passing the trials).
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Well, because it is mostly nonsense. What may happen is that gases form in decaying bodies due to bacterial activities (mostly it is simply CO2). Lysosomes (which are organelles of eukaryotes, i.e. sub-cellular entities of your body) do not do that.
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PHD In Physics from a Biologist?
CharonY replied to optforfirst's topic in Modern and Theoretical Physics
Sorry, maybe it is a wording problem, but I do not really understand your question. Do you mean which groups you need to join to work in these fields? Since many of the things you mentioned require a high level of mathematical training you really have to demonstrate that you are qualified. In more experimental and/or applied fields with intersection with biology, it is far more feasible to switch (or try to do the interdisciplinary dance, which is quite tricky to pull off). -
In biology you need good statistics. Especially with high-dimensional data low statistical power and high false positive detections pose immense problems. Using Capn's example (and 10% "good drugs" is really very generous, the odds in reality are much lower) the likelihood of any given find to be really one of the good ones is around 10%. I.e. you are not better off than by randomly selecting a drug. Saves money on the study, though.
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What Cap'n said. Basically a variation of the low number/rare event fishing game.
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There are certainly also biological limits rather than purely physical ones. Gigantism is caused by a genetic mutation, for instance. Also for a longer perspective: My link
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So, it sounds like a multiple-hypothesis testing type of problem?
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Corpses smell due to the degradation products produced by bacteria and other microorganisms that are using the corpse as food. So basically what you smell are bacteria. If cells die, they tend to lyse, i.e. they burst and and the molecules just mix with their surroundings. So they do not leave corpses per se. There may be lipid residues (parts of their membrane) but they will usually be quickly utilized e.g. by other bacteria.
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Theory of Evolution
CharonY replied to markearthling's topic in Evolution, Morphology and Exobiology
Just to reiterate, evolution, i.e. change of allele frequency over time is easily observable. Through which precise series of events a particular evolutionary outcome was reached is often not answerable. It is akin to see a speck of dust and asking how precisely it ended up there. You can e.g. analyze its composition to figure out its origin, check the wind to make reasonable guesses from how far it may have come etc. But you will not be able to reconstruct the events with absolute certainty. -
Ecological/Evolutionary Biology vs. Environmental Studies
CharonY replied to Ainotna's topic in Science Education
Well, I think you need to be a bit more specific. Ecology preservation is not a job description as such. Green energy is quite a different beast, and so on. For instance in the area of green energy involves biological as well as non-biological technologies, there is basic and applied research, there are companies in that field that need anything from construction/design, sales, maintenance and so on. Maybe you should just check out a few companies and job advertisements and find the precise area you are interested in?