nice alignment tool

[Hydrazin]

Hi all,

 

I have been searching for a specific alignment tool for a while now.

I am looking for a pairwise/multiple alignment tool that will display the similarity with a white/gray/black shaded background. It looks like its not easy to find one.

This is the kind of output I am looking for:

 

http://en.wikipedia.org/wiki/File:Hemagglutinin-alignments.png

 

Looks like this is not a feature of the standard tools.

 

Does anyone has a suggestion?

 

Thanks in advance!

Hydrazin

[Arete]

Hi all,

 

I have been searching for a specific alignment tool for a while now.

I am looking for a pairwise/multiple alignment tool that will display the similarity with a white/gray/black shaded background. It looks like its not easy to find one.

This is the kind of output I am looking for:

 

http://en.wikipedia....-alignments.png

 

Looks like this is not a feature of the standard tools.

 

Does anyone has a suggestion?

 

Thanks in advance!

Hydrazin

 

Geneious - http://www.geneious.com/

 

allows you to change the color scheme of alignments. My PhD supervisor is red-green colorblind and found it was the only software which allowed him to edit sequence data.